posDemux

The goal of posDemux is to provide tools for tools for handling reads with combinatorial barcodes, and multiple adapter regions. This includes utilities for demultiplexing, sequence segmenting and filtering. The package is intended to work with single-cell RNA-seq data with multiple barcoding (e.g. SPLiT-seq and PETRI-seq).

Installation

You can install the development version of posDemux from GitHub with:

# install.packages("devtools")
devtools::install_github("yaccos/posDemux")

Usage

Please see the package vignettes.

Issues

Please use the repository’s issue tracker if you cannot make the package work or if you have suggestions for improvements.